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1

FROM FOLDING THEORIES TO FOLDING PROTEINS: A Review and Assessment of Simulation Studies of Protein Folding and Unfolding

Shea, Joan-Emma, Brooks III, Charles L

Journal:

Annual Review of Physical Chemistry

Year:

2001

Language:

english

File:

PDF, 917 KB

english, 2001

2

Do silicone breast implants cause rheumatologic disorders?: A systematic review for a Court-Appointed National Science Panel

Peter Tugwell, George Wells, Joan Peterson, Vivian Welch, Jacqueline Page, Carolyn Davison, Jessie McGowan, David Ramroth, Beverley Shea

Journal:

Arthritis & Rheumatism

Year:

2001

Language:

english

File:

PDF, 74 KB

english, 2001

3

Overhauser dynamic nuclear polarization and molecular dynamics simulations using pyrroline and piperidine ring nitroxide radicals

Brandon D. Armstrong, Patricia Soto, Joan-Emma Shea, Songi Han

Journal:

Journal of Magnetic Resonance

Year:

2009

Language:

english

File:

PDF, 350 KB

english, 2009

4

First trimester ultrasound screening is effective in reducing postterm labor induction rates: A randomized controlled trial

Kelly A Bennett, Joan M.G Crane, Patrick O'Shea, Joanne Lacelle, Donna Hutchens, Joshua A Copel

Journal:

American Journal of Obstetrics and Gynecology

Year:

2004

Language:

english

File:

PDF, 121 KB

english, 2004

5

The Roper–Logan–Tierney (1996) model of nursing as a tool for professional development in education

Fiona Timmins, Joan O'Shea

Journal:

Nurse Education in Practice

Year:

2004

Language:

english

File:

PDF, 183 KB

english, 2004

6

Binding Modes of Thioflavin-T to the Single-Layer β-Sheet of the Peptide Self-Assembly Mimics

Chun Wu, Matthew Biancalana, Shohei Koide, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 435 KB

english, 2009

7

114 Altered Expression of Tight Junction-Related Proteins and Increased Intestinal Permeability in a Rat Model of Post-Infectious Gut Dysfunction

Fernandez-Blanco, Joan Antoni, Martinez, Vicente, Shea-Donohue, Terez, Vergara, Patri

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 55 KB

english, 2013

8

Effects of confinement and crowding on the thermodynamics and kinetics of folding of a minimalist β-barrel protein

Friedel, Miriam, Sheeler, Daniel J., Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 433 KB

english, 2003

9

Computational Studies of Protein Aggregation: Methods and Applications

Morriss-Andrews, Alex, Shea, Joan-Emma

Journal:

Annual Review of Physical Chemistry

Year:

2015

Language:

english

File:

PDF, 2.36 MB

english, 2015

10

Experiences of Parents Attending a Programme for Families of Adolescent Child Sexual Abuse Perpetrators in Ireland

Duane, Yvonne, Carr, Alan, Cherry, Joan, McGrath, Kieran, O'Shea, Deirdre

Journal:

Child Care in Practice

Year:

2002

Language:

english

File:

PDF, 390 KB

english, 2002

11

V. Meta-Analysis of the Efficacy of Hormone Replacement Therapy in Treating and Preventing Osteoporosis in Postmenopausal Women

Wells, George, Tugwell, Peter, Shea, Beverley, Guyatt, Gordon, Peterson, Joan, Zytaruk, Nicole, Robinson, Vivian, Henry, David, O’Connell, Diane, Cranney, Ann

Journal:

Endocrine Reviews

Year:

2002

Language:

english

File:

PDF, 143 KB

english, 2002

12

An adaptive bias - hybrid MD/kMC algorithm for protein folding and aggregation.

Peter, Emanuel Karl Karl, Shea, Joan-Emma

Journal:

Physical Chemistry Chemical Physics

Year:

2017

Language:

english

File:

PDF, 6.17 MB

english, 2017

13

Not Physical Chemistry (in the Eyes of the Journal of Physical Chemistry )

Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 171 KB

english, 2017

14

Lay responder naloxone access and Good Samaritan law compliance: postcard survey results from 20 Indiana counties

Watson, Dennis P., Ray, Bradley, Robison, Lisa, Huynh, Philip, Sightes, Emily, Walker, La Shea, Brucker, Krista, Duwve, Joan

Journal:

Harm Reduction Journal

Year:

2018

Language:

english

File:

PDF, 523 KB

english, 2018

15

Wayfinding the Live 5-2-1-0 Initiative—At the Intersection between Systems Thinking and Community-Based Childhood Obesity Prevention

Amed, Shazhan, Shea, Stephanie, Pinkney, Susan, Wharf Higgins, Joan, Naylor, Patti-Jean

Journal:

International Journal of Environmental Research and Public Health

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016

16

[IEEE 2020 Intermountain Engineering, Technology and Computing (IETC) - Orem, UT, USA (2020.10.2-2020.10.3)] 2020 Intermountain Engineering, Technology and Computing (IETC) - Design of Common-Mode Feedback for High-Gain Charge Amplifier

Song, Yixin, Rozsa, Jace, Magalhaes, Joan, Smith, Shea, Karlinsey, Benjamin, Kinnison, Whitney, Gustafson, Elaura, Austin, Daniel, Hawkins, Aaron R., Chiang, Shiuh-hua Wood

Year:

2020

File:

PDF, 639 KB

2020

17

Profiles of the parents of adolescent CSA perpetrators attending a voluntary outpatient treatment programme in Ireland

Yvonne Duane, Alan Carr, Joan Cherry, Kieran McGrath, Deirdre O'Shea

Journal:

Child Abuse Review

Year:

2003

Language:

english

File:

PDF, 137 KB

english, 2003

18

TiReX: Replica-exchange molecular dynamics using Tinker

Evgeni S. Penev, Sotiria Lampoudi, Joan-Emma Shea

Journal:

Computer Physics Communications

Year:

2009

Language:

english

File:

PDF, 440 KB

english, 2009

19

Fokker-Planck equation and non-linear hydrodynamic equations of a system of several Brownian particles in a non-equilibrium bath

Joan-Emma Shea, Irwin Oppenheim

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1997

Language:

english

File:

PDF, 1023 KB

english, 1997

20

Fokker–Planck and non-linear hydrodynamic equations of an inelastic system of several Brownian particles in a non-equilibrium bath

Joan-Emma Shea, Irwin Oppenheim

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1998

Language:

english

File:

PDF, 274 KB

english, 1998

21

Clinical practice guideline improves the treatment of sickle cell disease vasoocclusive pain

Lisa K. Morrissey, Joan O'Brien Shea, Leslie A. Kalish, Debra L. Weiner, Patricia Branowicki, Matthew M. Heeney

Journal:

Pediatric Blood & Cancer

Year:

2009

Language:

english

File:

PDF, 77 KB

english, 2009

22

Sequence periodicity and secondary structure propensity in model proteins

Giovanni Bellesia, Andrew Iain Jewett, Joan-Emma Shea

Journal:

Protein Science

Year:

2010

Language:

english

File:

PDF, 668 KB

english, 2010

23

Relative stability of de novo four–helix bundle proteins: Insights from coarse grained molecular simulations

Giovanni Bellesia, Andrew I. Jewett, Joan–Emma Shea

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 743 KB

english, 2011

24

Temperature dependence of the free energy landscape of the src-SH3 protein domain

Weihua Guo, Sotiria Lampoudi, Joan-Emma Shea

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.00 MB

english, 2004

25

Reconciling theories of chaperonin accelerated folding with experimental evidence

Andrew I. Jewett, Joan-Emma Shea

Journal:

Cellular and Molecular Life Sciences

Year:

2010

Language:

english

File:

PDF, 618 KB

english, 2010

26

Long-term maintenance of therapeutic cyclosporine levels leads to optimal graft survival without evidence of chronic nephrotoxicity

G. S. Lipkowitz, Robert L. Madden, Jeffrey Mulhern, Gregory Braden, Michael O'Shea, Joan O'Shaughnessy, Shirin Nash, Alex Kurbanov, Jonathan Freeman, Helmut Rennke, Michael Germain

Journal:

Transplant International

Year:

1999

Language:

english

File:

PDF, 69 KB

english, 1999

27

The Thermodynamics of Folding of a β Hairpin Peptide Probed Through Replica Exchange Molecular Dynamics Simulations

Andrij Baumketner, Joan-Emma Shea

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2006

Language:

english

File:

PDF, 505 KB

english, 2006

28

Outcome in Poor Grade Subarachnoid Hemorrhage Patients Treated with Acute Endovascular Coiling of Aneurysms and Aggressive Intensive Care

Christopher J. Taylor, Fergus Robertson, David Brealey, Frankie O’shea, Tina Stephen, Stefan Brew, Joan P. Grieve, Martin Smith, Ian Appleby

Journal:

Neurocritical Care

Year:

2011

Language:

english

File:

PDF, 178 KB

english, 2011

29

Long-term maintenance of therapeutic cyclosporine levels leads to optimal graft survival without evidence of chronic nephrotoxicity

GEORGE S. Lipkowitz, ROBERT L. Madden, JEFFREY Mulhern, GREGORY Braden, MICHAEL O'Shea, JOAN O'Shaughnessy, SHIRIN Nash, ALEX Kurbanov, JONATHAN Freeman, HELMUT Rennke, MICHAEL Germain

Journal:

Transplant International

Year:

1999

Language:

english

File:

PDF, 667 KB

english, 1999

30

Completely reversed acute rejection is not a significant risk factor for the development of chronic rejection in renal allograft recipients

Robert L. Madden, Jeffrey G. Mulhern, Bernard J. Benedetto, Michael H. O'Shea, Michael J. Germain, Gregory L. Braden, Joan O'Shaughnessy, George S. Lipkowitz

Journal:

Transplant International

Year:

2000

Language:

english

File:

PDF, 645 KB

english, 2000

31

Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease

Bernstein, Summer L., Dupuis, Nicholas F., Lazo, Noel D., Wyttenbach, Thomas, Condron, Margaret M., Bitan, Gal, Teplow, David B., Shea, Joan-Emma, Ruotolo, Brandon T., Robinson, Carol V.

Journal:

Nature Chemistry

Year:

2009

Language:

english

File:

PDF, 517 KB

english, 2009

32

The Physics of the Interactions Governing Folding and Association of Proteins

WEIHUA GUO, JOAN-EMMA SHEA, R. STEPHEN BERRY

Journal:

Annals of the New York Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 3.24 MB

english, 2006

33

Amyloid β-protein monomer structure: A computational and experimental study

Andrij Baumketner, Summer L. Bernstein, Thomas Wyttenbach, Gal Bitan, David B. Teplow, Michael T. Bowers, Joan-Emma Shea

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 363 KB

english, 2006

34

Structure of the 21–30 fragment of amyloid β-protein

Andrij Baumketner, Summer L. Bernstein, Thomas Wyttenbach, Noel D. Lazo, David B. Teplow, Michael T. Bowers, Joan-Emma Shea

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 499 KB

english, 2006

35

Effects of surface interactions on peptide aggregate morphology

Morriss-Andrews, Alex, Bellesia, Giovanni, Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 721 KB

english, 2011

36

Coarse-grained models for protein aggregation

Chun Wu, Joan-Emma Shea

Journal:

Current Opinion in Structural Biology

Year:

2011

Language:

english

File:

PDF, 546 KB

english, 2011

37

A COMMUNITY EDUCATIONAL PROGRAM FOR THE EMOTIONALLY DISTURBED CHILD

SOL NICHTERN, GEORGE T. DONAHUE, JOAN O'SHEA, MARY MARANS, MARGARET CURTIS, CHARLES BRODY

Journal:

American Journal of Orthopsychiatry

Year:

1964

File:

PDF, 562 KB

1964

38

Computational and Experimental Analyses Reveal the Essential Roles of Interdomain Linkers in the Biological Function of Chemotaxis Histidine Kinase CheA

Wang, Xiqing, Wu, Chun, Vu, Anh, Shea, Joan-Emma, Dahlquist, Frederick W.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

39

Reconstruction of the src-SH3 Protein Domain Transition State Ensemble using Multiscale Molecular Dynamics Simulations

Feng Ding, Weihua Guo, Nikolay V. Dokholyan, Eugene I. Shakhnovich, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 968 KB

english, 2005

40

Folding Landscapes of the Alzheimer Amyloid-β(12-28) Peptide

Andrij Baumketner, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 954 KB

english, 2006

41

The Structure of the Alzheimer Amyloid β 10-35 Peptide Probed through Replica-Exchange Molecular Dynamics Simulations in Explicit Solvent

Andrij Baumketner, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 620 KB

english, 2007

42

Effects of Familial Alzheimer’s Disease Mutations on the Folding Nucleation of the Amyloid β-Protein

Mary Griffin Krone, Andrij Baumketner, Summer L. Bernstein, Thomas Wyttenbach, Noel D. Lazo, David B. Teplow, Michael T. Bowers, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 478 KB

english, 2008

43

The Binding of Thioflavin T and Its Neutral Analog BTA-1 to Protofibrils of the Alzheimer’s Disease Aβ16–22 Peptide Probed by Molecular Dynamics Simulations

Chun Wu, Zhixiang Wang, Hongxing Lei, Yong Duan, Michael T. Bowers, Joan-Emma Shea

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 608 KB

english, 2008

44

The Structure of Aβ42 C-Terminal Fragments Probed by a Combined Experimental and Theoretical Study

Chun Wu, Megan M. Murray, Summer L. Bernstein, Margaret M. Condron, Gal Bitan, Joan-Emma Shea, Michael T. Bowers

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 418 KB

english, 2009

45

[IEEE 2010 IEEE International Vacuum Electronics Conference (IVEC) - Monterey, CA, USA (2010.05.18-2010.05.20)] 2010 IEEE International Vacuum Electronics Conference (IVEC) - 11.5: Electron transport and emission from thin film semiconductors

Jensen, Kevin L., Yater, Joan E., Pate, Bradford B., Shaw, Jon L., Montgomery, Eric J., Feldman, Donald W., O'Shea, Patrick G.

Year:

2010

Language:

english

File:

PDF, 573 KB

english, 2010

46

On the Origin of the Stronger Binding of PIB over Thioflavin T to Protofibrils of the Alzheimer Amyloid-β Peptide: A Molecular Dynamics Study

Wu, Chun, Bowers, Michael T., Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 538 KB

english, 2011

47

Posttransition State Desolvation of the Hydrophobic Core of the src-SH3 Protein Domain

Guo, Weihua, Lampoudi, Sotiria, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 770 KB

english, 2003

48

Binding of Congo Red to Amyloid Protofibrils of the Alzheimer Aβ9–40 Peptide Probed by Molecular Dynamics Simulations

Wu, Chun, Scott, Justin, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 583 KB

english, 2012

49

What Determines the Structure and Stability of KFFE Monomers, Dimers, and Protofibrils?

Bellesia, Giovanni, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

50

Simulations of Protein Aggregation in the Cellular Milieu

Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 41 KB

english, 2010

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